HL_9BDL_011

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9BDL|1|A18S|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_011 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1123

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BDL|1|A18S|C|498
9BDL|1|A18S|G|499
9BDL|1|A18S|A|500
9BDL|1|A18S|C|501
9BDL|1|A18S|C|502
9BDL|1|A18S|C|503
9BDL|1|A18S|G|504

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS24

40S ribosomal protein S24