HL_9BDL_013

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_013 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.1499

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDL|1|A18S|A|569
9BDL|1|A18S|C|570
9BDL|1|A18S|U|571
9BDL|1|A18S|U|572
9BDL|1|A18S|U|573
9BDL|1|A18S|A|574
9BDL|1|A18S|A|575
9BDL|1|A18S|A|576
9BDL|1|A18S|U|577
9BDL|1|A18S|C|578
9BDL|1|A18S|C|579
9BDL|1|A18S|U|580
9BDL|1|A18S|U|581

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24