HL_9BDL_029

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_029 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2724

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9BDL|1|A18S|C|1416
9BDL|1|A18S|C|1417
9BDL|1|A18S|C|1423
9BDL|1|A18S|G|1424

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS16

Small ribosomal subunit protein uS9

Chain AS19

Small ribosomal subunit protein eS19