HL_9BDL_031

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_031 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.1315

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

9BDL|1|A18S|C|1565
9BDL|1|A18S|G|1566
9BDL|1|A18S|G|1567
9BDL|1|A18S|C|1568
9BDL|1|A18S|A|1569
9BDL|1|A18S|G|1570

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS18

40S ribosomal protein S18

Chain AS19

Small ribosomal subunit protein eS19