HL_9BDL_050

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

9BDL|1|A28S|U|1179, 9BDL|1|A28S|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_050 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1563

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9BDL|1|A28S|U|1177
9BDL|1|A28S|G|1178
9BDL|1|A28S|U|1179
9BDL|1|A28S|C|1180
9BDL|1|A28S|C|1183
9BDL|1|A28S|A|1184

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

Large ribosomal subunit protein uL18

Chain AL10

Ribosomal protein L10