HL_9BDL_052
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUACGAAAG
- Length
- 9 nucleotides
- Bulged bases
- 9BDL|1|A28S|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDL_052 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2845
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BDL|1|A28S|C|1363
9BDL|1|A28S|U|1364
9BDL|1|A28S|A|1368
9BDL|1|A28S|C|1369
9BDL|1|A28S|G|1370
9BDL|1|A28S|A|1371
9BDL|1|A28S|A|1372
9BDL|1|A28S|A|1373
9BDL|1|A28S|G|1374
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- 60S ribosomal protein L4
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL26
- 60S ribosomal protein L26
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