HL_9BDL_055

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

9BDL|1|A28S|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_055 not in the Motif Atlas

Geometric match to HL_8C3A_203

Geometric discrepancy: 0.3528

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BDL|1|A28S|G|1479
9BDL|1|A28S|C|1480
9BDL|1|A28S|C|1481
9BDL|1|A28S|G|1482
9BDL|1|A28S|C|1483
9BDL|1|A28S|G|1484
9BDL|1|A28S|C|1485
9BDL|1|A28S|C|1486

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL36

60S ribosomal protein L36