HL_9BDL_066

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGGGACGCUACG

Length

34 nucleotides

Bulged bases

9BDL|1|A28S|C|2094, 9BDL|1|A28S|U|2267, 9BDL|1|A28S|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|C|2087
9BDL|1|A28S|A|2088
9BDL|1|A28S|G|2089
9BDL|1|A28S|U|2090
9BDL|1|A28S|C|2091
9BDL|1|A28S|G|2092
9BDL|1|A28S|G|2093
9BDL|1|A28S|C|2094
9BDL|1|A28S|A|2095
9BDL|1|A28S|G|2096
9BDL|1|A28S|A|2097
9BDL|1|A28S|G|2098
9BDL|1|A28S|C|2099
9BDL|1|A28S|G|2100
9BDL|1|A28S|A|2101
9BDL|1|A28S|G|2102
9BDL|1|A28S|A|2103
9BDL|1|A28S|A|2104
9BDL|1|A28S|A|2105
9BDL|1|A28S|G|2106
9BDL|1|A28S|A|2107
9BDL|1|A28S|G|2108
9BDL|1|A28S|A|2109
9BDL|1|A28S|G|2110
9BDL|1|A28S|G|2261
9BDL|1|A28S|G|2262
9BDL|1|A28S|A|2263
9BDL|1|A28S|C|2264
9BDL|1|A28S|G|2265
9BDL|1|A28S|C|2266
9BDL|1|A28S|U|2267
9BDL|1|A28S|A|2268
9BDL|1|A28S|C|2269
9BDL|1|A28S|G|2270

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7

Chain AL18

Large ribosomal subunit protein eL18

Chain AL29

Large ribosomal subunit protein eL29

Chain ALNW

60S ribosomal protein L28