HL_9BDL_070

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_070 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1594

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDL|1|A28S|C|2458
9BDL|1|A28S|G|2459
9BDL|1|A28S|A|2460
9BDL|1|A28S|G|2461
9BDL|1|A28S|C|2462
9BDL|1|A28S|G|2463

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL15

60S ribosomal protein L15

Chain AL37

60S ribosomal protein L37