HL_9BDL_072

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9BDL|1|A28S|U|2530, 9BDL|1|A28S|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_072 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0985

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDL|1|A28S|G|2523
9BDL|1|A28S|U|2524
9BDL|1|A28S|U|2525
9BDL|1|A28S|C|2526
9BDL|1|A28S|A|2527
9BDL|1|A28S|G|2528
9BDL|1|A28S|A|2529
9BDL|1|A28S|U|2530
9BDL|1|A28S|C|2531
9BDL|1|A28S|C|2532

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL25

Large ribosomal subunit protein uL23

Chain AL34

60S ribosomal protein L34