HL_9BDL_075

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9BDL|1|A28S|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_075 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1752

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9BDL|1|A28S|G|2624
9BDL|1|A28S|U|2625
9BDL|1|A28S|U|2626
9BDL|1|A28S|C|2627
9BDL|1|A28S|U|2628
9BDL|1|A28S|C|2629
9BDL|1|A28S|U|2630
9BDL|1|A28S|U|2631
9BDL|1|A28S|U|2632

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL22

Large ribosomal subunit protein eL22