HL_9BDL_077

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

9BDL|1|A28S|C|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_077 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2151

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9BDL|1|A28S|G|2705
9BDL|1|A28S|G|2706
9BDL|1|A28S|U|2707
9BDL|1|A28S|U|2708
9BDL|1|A28S|C|2709
9BDL|1|A28S|C|2710

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL25

Large ribosomal subunit protein uL23