HL_9BDL_085

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9BDL|1|A28S|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_085 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.2344

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDL|1|A28S|C|3668
9BDL|1|A28S|G|3669
9BDL|1|A28S|C|3670
9BDL|1|A28S|G|3671
9BDL|1|A28S|G|3672
9BDL|1|A28S|C|3673
9BDL|1|A28S|G|3674

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15