HL_9BDL_092

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9BDL|1|A28S|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_092 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1051

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9BDL|1|A28S|C|4193
9BDL|1|A28S|U|4194
9BDL|1|A28S|G|4195
9BDL|1|A28S|G|4196
9BDL|1|A28S|G|4197
9BDL|1|A28S|G|4198
9BDL|1|A28S|C|4199
9BDL|1|A28S|G|4200
9BDL|1|A28S|G|4201

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL29

Large ribosomal subunit protein eL29

Chain PTRN

Transfer RNA; tRNA