HL_9BDL_105

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9BDL|1|A28S|G|4694, 9BDL|1|A28S|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_105 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0704

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9BDL|1|A28S|C|4688
9BDL|1|A28S|U|4689
9BDL|1|A28S|G|4690
9BDL|1|A28S|A|4691
9BDL|1|A28S|A|4692
9BDL|1|A28S|C|4693
9BDL|1|A28S|G|4694
9BDL|1|A28S|C|4695
9BDL|1|A28S|C|4696
9BDL|1|A28S|U|4697
9BDL|1|A28S|C|4698
9BDL|1|A28S|U|4699
9BDL|1|A28S|A|4700
9BDL|1|A28S|A|4701
9BDL|1|A28S|G|4702

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9

Chain AL16

Large ribosomal subunit protein uL13

Chain AL40

Large ribosomal subunit protein eL40