HL_9BDL_108

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9BDL|1|A28S|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_108 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0973

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9BDL|1|A28S|G|4975
9BDL|1|A28S|U|4976
9BDL|1|A28S|A|4977
9BDL|1|A28S|G|4978
9BDL|1|A28S|A|4979
9BDL|1|A28S|C|4980
9BDL|1|A28S|G|4981
9BDL|1|A28S|A|4982
9BDL|1|A28S|C|4983

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL17

60S ribosomal protein L17

Chain AL31

60S ribosomal protein L31