HL_9BDL_112

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_112 not in the Motif Atlas

Homologous match to HL_8P9A_188

Geometric discrepancy: 0.1997

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9BDL|1|A58S|C|107
9BDL|1|A58S|A|108
9BDL|1|A58S|C|109
9BDL|1|A58S|U|110
9BDL|1|A58S|U|111
9BDL|1|A58S|G|112

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

Large ribosomal subunit protein uL23

Chain AL37

60S ribosomal protein L37

Chain AL39

60S ribosomal protein L39