HL_9BDL_113

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDL_113 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3067

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

9BDL|1|A58S|G|121
9BDL|1|A58S|G|122
9BDL|1|A58S|U|123
9BDL|1|A58S|U|124
9BDL|1|A58S|C|125
9BDL|1|A58S|C|126
9BDL|1|A58S|U|127
9BDL|1|A58S|C|128
9BDL|1|A58S|C|129

Current chains

Chain A58S

5.8S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL25

Large ribosomal subunit protein uL23