HL_9BDN_012

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9BDN|1|A18S|U|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_012 not in the Motif Atlas

Geometric match to HL_3SIU_002

Geometric discrepancy: 0.3263

The information below is about HL_3SIU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.3

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9BDN|1|A18S|C|539
9BDN|1|A18S|U|540
9BDN|1|A18S|U|541
9BDN|1|A18S|U|542
9BDN|1|A18S|C|543
9BDN|1|A18S|G|544

Current chains

Chain A18S

18S rRNA

Nearby chains