HL_9BDN_016

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

9BDN|1|A18S|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_016 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1652

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9BDN|1|A18S|U|820
9BDN|1|A18S|G|821
9BDN|1|A18S|U|822
9BDN|1|A18S|U|823
9BDN|1|A18S|C|824
9BDN|1|A18S|A|825
9BDN|1|A18S|A|826
9BDN|1|A18S|A|827
9BDN|1|A18S|G|828

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24