HL_9BDN_018

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9BDN|1|A18S|G|891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_018 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.583

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A18S|C|884
9BDN|1|A18S|U|885
9BDN|1|A18S|A|886
9BDN|1|A18S|U|887
9BDN|1|A18S|U|888
9BDN|1|A18S|U|889
9BDN|1|A18S|U|890
9BDN|1|A18S|G|891
9BDN|1|A18S|U|892
9BDN|1|A18S|U|893
9BDN|1|A18S|G|894
9BDN|1|A18S|G|895
9BDN|1|A18S|U|896
9BDN|1|A18S|U|897
9BDN|1|A18S|U|898
9BDN|1|A18S|U|899
9BDN|1|A18S|C|900
9BDN|1|A18S|G|901
9BDN|1|A18S|G|902

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS06

40S ribosomal protein S6