HL_9BDN_024
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_024 not in the Motif Atlas
- Homologous match to HL_8C3A_216
- Geometric discrepancy: 0.1339
- The information below is about HL_8C3A_216
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 302
Unit IDs
9BDN|1|A18S|U|1178
9BDN|1|A18S|G|1179
9BDN|1|A18S|C|1180
9BDN|1|A18S|A|1181
9BDN|1|A18S|A|1182
9BDN|1|A18S|A|1183
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL41
- eL41
- Chain AL43
- 60S ribosomal protein L37a
Coloring options: