3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGCAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9BDN_024 not in the Motif Atlas
Homologous match to HL_8C3A_216
Geometric discrepancy: 0.1339
The information below is about HL_8C3A_216
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

9BDN|1|A18S|U|1178
9BDN|1|A18S|G|1179
9BDN|1|A18S|C|1180
9BDN|1|A18S|A|1181
9BDN|1|A18S|A|1182
9BDN|1|A18S|A|1183

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain A28S
Large subunit ribosomal RNA; LSU rRNA
Chain AL41
eL41
Chain AL43
60S ribosomal protein L37a

Coloring options:


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