HL_9BDN_037

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_037 not in the Motif Atlas

Homologous match to HL_5TBW_003

Geometric discrepancy: 0.0857

The information below is about HL_5TBW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

9BDN|1|A28S|C|89
9BDN|1|A28S|G|90
9BDN|1|A28S|G|91
9BDN|1|A28S|C|92
9BDN|1|A28S|G|93
9BDN|1|A28S|A|94
9BDN|1|A28S|G|95

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL18

Large ribosomal subunit protein eL18

Chain AL28

60S ribosomal protein L27a

Chain AL42

eL42

Chain ETRN

Transfer RNA; tRNA