HL_9BDN_039

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_039 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3079

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9BDN|1|A28S|U|204
9BDN|1|A28S|C|205
9BDN|1|A28S|U|206
9BDN|1|A28S|G|207
9BDN|1|A28S|A|208
9BDN|1|A28S|U|209
9BDN|1|A28S|C|210
9BDN|1|A28S|G|211

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL26

60S ribosomal protein L26

Chain AL32

Large ribosomal subunit protein eL32