HL_9BDN_043
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 9BDN|1|A28S|G|315, 9BDN|1|A28S|U|316
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_043 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.1655
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9BDN|1|A28S|G|314
9BDN|1|A28S|G|315
9BDN|1|A28S|U|316
9BDN|1|A28S|A|317
9BDN|1|A28S|A|318
9BDN|1|A28S|A|319
9BDN|1|A28S|C|320
9BDN|1|A28S|U|321
9BDN|1|A28S|C|322
9BDN|1|A28S|C|323
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL36
- 60S ribosomal protein L36
- Chain AL42
- eL42
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