HL_9BDN_047

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_047 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3976

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|G|758
9BDN|1|A28S|G|759
9BDN|1|A28S|G|760
9BDN|1|A28S|C|904
9BDN|1|A28S|C|905

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9