HL_9BDN_048

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAGACCCG

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|C|967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_048 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1663

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9BDN|1|A28S|C|962
9BDN|1|A28S|G|963
9BDN|1|A28S|A|964
9BDN|1|A28S|G|965
9BDN|1|A28S|A|966
9BDN|1|A28S|C|967
9BDN|1|A28S|C|968
9BDN|1|A28S|C|969
9BDN|1|A28S|G|970

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL06

60S ribosomal protein L6

Chain AL07

60S ribosomal protein L7