HL_9BDN_053

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_053 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0785

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDN|1|A28S|U|1389
9BDN|1|A28S|G|1390
9BDN|1|A28S|A|1391
9BDN|1|A28S|A|1392
9BDN|1|A28S|G|1393
9BDN|1|A28S|G|1394

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL18

Large ribosomal subunit protein eL18

Chain AL28

60S ribosomal protein L27a

Chain AL36

60S ribosomal protein L36