HL_9BDN_055

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

9BDN|1|A28S|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_055 not in the Motif Atlas

Geometric match to HL_8C3A_203

Geometric discrepancy: 0.3581

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

9BDN|1|A28S|G|1479
9BDN|1|A28S|C|1480
9BDN|1|A28S|C|1481
9BDN|1|A28S|G|1482
9BDN|1|A28S|C|1483
9BDN|1|A28S|G|1484
9BDN|1|A28S|C|1485
9BDN|1|A28S|C|1486

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL36

60S ribosomal protein L36