HL_9BDN_060
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAACG
- Length
- 7 nucleotides
- Bulged bases
- 9BDN|1|A28S|C|1768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_060 not in the Motif Atlas
- Geometric match to HL_5TBW_025
- Geometric discrepancy: 0.3468
- The information below is about HL_5TBW_025
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
9BDN|1|A28S|C|1763
9BDN|1|A28S|G|1764
9BDN|1|A28S|A|1765
9BDN|1|A28S|A|1766
9BDN|1|A28S|A|1767
9BDN|1|A28S|C|1768
9BDN|1|A28S|G|1769
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AS18
- 40S ribosomal protein S18
Coloring options: