Loop HL_9BDN

3D structure

PDB id: 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S ribosome with angiogenin and tRNAAla
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: GAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCAC
Length: 50 nucleotides
Bulged bases: 9BDN|1|A28S|A|1979
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9BDN|1|A28S|G|1969
9BDN|1|A28S|A|1970
9BDN|1|A28S|U|1971
9BDN|1|A28S|G|1972
9BDN|1|A28S|G|1973
9BDN|1|A28S|U|1974
9BDN|1|A28S|G|1975
9BDN|1|A28S|G|1976
9BDN|1|A28S|C|1977
9BDN|1|A28S|C|1978
9BDN|1|A28S|A|1979
9BDN|1|A28S|U|1980
9BDN|1|A28S|G|1981
9BDN|1|A28S|G|1982
9BDN|1|A28S|A|1983
9BDN|1|A28S|A|1984
9BDN|1|A28S|G|1985
9BDN|1|A28S|U|1986
9BDN|1|A28S|C|1987
9BDN|1|A28S|G|1988
9BDN|1|A28S|G|1989
9BDN|1|A28S|A|1990
9BDN|1|A28S|A|1991
9BDN|1|A28S|U|1992
9BDN|1|A28S|C|1993
9BDN|1|A28S|C|1994
9BDN|1|A28S|G|1995
9BDN|1|A28S|C|1996
9BDN|1|A28S|U|1997
9BDN|1|A28S|A|1998
9BDN|1|A28S|A|1999
9BDN|1|A28S|G|2000
9BDN|1|A28S|G|2001
9BDN|1|A28S|A|2002
9BDN|1|A28S|G|2003
9BDN|1|A28S|U|2004
9BDN|1|A28S|G|2005
9BDN|1|A28S|U|2006
9BDN|1|A28S|G|2007
9BDN|1|A28S|U|2008
9BDN|1|A28S|A|2009
9BDN|1|A28S|A|2010
9BDN|1|A28S|C|2011
9BDN|1|A28S|A|2012
9BDN|1|A28S|A|2013
9BDN|1|A28S|C|2014
9BDN|1|A28S|U|2015
9BDN|1|A28S|C|2016
9BDN|1|A28S|A|2017
9BDN|1|A28S|C|2018

Current chains

Chain A28S: 28S rRNA

Nearby chains

Chain AL12: uL11
Chain AL40: Large ribosomal subunit protein eL40
Chain ALP0: 60S acidic ribosomal protein P0
Chain TIRN: Transfer RNA; tRNA

HL_9BDN_064