HL_9BDN_065
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGGGACGCUACG
- Length
- 34 nucleotides
- Bulged bases
- 9BDN|1|A28S|C|2094, 9BDN|1|A28S|A|2104, 9BDN|1|A28S|A|2105, 9BDN|1|A28S|U|2267, 9BDN|1|A28S|C|2269
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDN|1|A28S|C|2087
9BDN|1|A28S|A|2088
9BDN|1|A28S|G|2089
9BDN|1|A28S|U|2090
9BDN|1|A28S|C|2091
9BDN|1|A28S|G|2092
9BDN|1|A28S|G|2093
9BDN|1|A28S|C|2094
9BDN|1|A28S|A|2095
9BDN|1|A28S|G|2096
9BDN|1|A28S|A|2097
9BDN|1|A28S|G|2098
9BDN|1|A28S|C|2099
9BDN|1|A28S|G|2100
9BDN|1|A28S|A|2101
9BDN|1|A28S|G|2102
9BDN|1|A28S|A|2103
9BDN|1|A28S|A|2104
9BDN|1|A28S|A|2105
9BDN|1|A28S|G|2106
9BDN|1|A28S|A|2107
9BDN|1|A28S|G|2108
9BDN|1|A28S|A|2109
9BDN|1|A28S|G|2110
9BDN|1|A28S|G|2261
9BDN|1|A28S|G|2262
9BDN|1|A28S|A|2263
9BDN|1|A28S|C|2264
9BDN|1|A28S|G|2265
9BDN|1|A28S|C|2266
9BDN|1|A28S|U|2267
9BDN|1|A28S|A|2268
9BDN|1|A28S|C|2269
9BDN|1|A28S|G|2270
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL06
- 60S ribosomal protein L6
- Chain AL07
- 60S ribosomal protein L7
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL29
- Large ribosomal subunit protein eL29
- Chain ALNW
- 60S ribosomal protein L28
Coloring options: