HL_9BDN_071

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9BDN|1|A28S|U|2530, 9BDN|1|A28S|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_071 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1234

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BDN|1|A28S|G|2523
9BDN|1|A28S|U|2524
9BDN|1|A28S|U|2525
9BDN|1|A28S|C|2526
9BDN|1|A28S|A|2527
9BDN|1|A28S|G|2528
9BDN|1|A28S|A|2529
9BDN|1|A28S|U|2530
9BDN|1|A28S|C|2531
9BDN|1|A28S|C|2532

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL25

Large ribosomal subunit protein uL23

Chain AL34

60S ribosomal protein L34