HL_9BDN_084

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

9BDN|1|A28S|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_084 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.253

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9BDN|1|A28S|C|3668
9BDN|1|A28S|G|3669
9BDN|1|A28S|C|3670
9BDN|1|A28S|G|3671
9BDN|1|A28S|G|3672
9BDN|1|A28S|C|3673
9BDN|1|A28S|G|3674

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15