HL_9BDN_092

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_092 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1283

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9BDN|1|A28S|C|4193
9BDN|1|A28S|U|4194
9BDN|1|A28S|G|4195
9BDN|1|A28S|G|4196
9BDN|1|A28S|G|4197
9BDN|1|A28S|G|4198
9BDN|1|A28S|C|4199
9BDN|1|A28S|G|4200
9BDN|1|A28S|G|4201

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL29

Large ribosomal subunit protein eL29

Chain PTRN

Transfer RNA; tRNA