HL_9BDN_094

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_094 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.2064

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9BDN|1|A28S|G|4250
9BDN|1|A28S|A|4251
9BDN|1|A28S|C|4252
9BDN|1|A28S|A|4253
9BDN|1|A28S|G|4254
9BDN|1|A28S|A|4255
9BDN|1|A28S|A|4256
9BDN|1|A28S|A|4257
9BDN|1|A28S|C|4258

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL11

60S ribosomal protein L11