HL_9BDN_095

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_095 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0952

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

9BDN|1|A28S|C|4270
9BDN|1|A28S|A|4271
9BDN|1|A28S|G|4272
9BDN|1|A28S|A|4273
9BDN|1|A28S|A|4274
9BDN|1|A28S|G|4275
9BDN|1|A28S|G|4276
9BDN|1|A28S|G|4277

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL21

60S ribosomal protein L21

Chain PTRN

Transfer RNA; tRNA