HL_9BDN_105
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9BDN|1|A28S|G|4694, 9BDN|1|A28S|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_105 not in the Motif Atlas
- Homologous match to HL_8C3A_068
- Geometric discrepancy: 0.0674
- The information below is about HL_8C3A_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.9
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9BDN|1|A28S|C|4688
9BDN|1|A28S|U|4689
9BDN|1|A28S|G|4690
9BDN|1|A28S|A|4691
9BDN|1|A28S|A|4692
9BDN|1|A28S|C|4693
9BDN|1|A28S|G|4694
9BDN|1|A28S|C|4695
9BDN|1|A28S|C|4696
9BDN|1|A28S|U|4697
9BDN|1|A28S|C|4698
9BDN|1|A28S|U|4699
9BDN|1|A28S|A|4700
9BDN|1|A28S|A|4701
9BDN|1|A28S|G|4702
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL09
- 60S ribosomal protein L9
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL40
- Large ribosomal subunit protein eL40
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