HL_9BDN_116

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9BDN|1|ETRN|C|16, 9BDN|1|ETRN|G|18, 9BDN|1|ETRN|G|19, 9BDN|1|ETRN|U|20, 9BDN|1|ETRN|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_116 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.2263

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

9BDN|1|ETRN|C|13
9BDN|1|ETRN|A|14
9BDN|1|ETRN|G|15
9BDN|1|ETRN|C|16
9BDN|1|ETRN|C|17
9BDN|1|ETRN|U|17|||A
9BDN|1|ETRN|G|18
9BDN|1|ETRN|G|19
9BDN|1|ETRN|U|20
9BDN|1|ETRN|A|21
9BDN|1|ETRN|G|22

Current chains

Chain ETRN

tRNAfMet

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AS01

40S ribosomal protein S3a