HL_9BDN_121
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDN_121 not in the Motif Atlas
- Homologous match to HL_2BTE_004
- Geometric discrepancy: 0.1598
- The information below is about HL_2BTE_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9BDN|1|PTRN|G|53
9BDN|1|PTRN|U|54
9BDN|1|PTRN|U|55
9BDN|1|PTRN|C|56
9BDN|1|PTRN|A|57
9BDN|1|PTRN|A|58
9BDN|1|PTRN|A|59
9BDN|1|PTRN|U|60
9BDN|1|PTRN|C|61
Current chains
- Chain PTRN
- tRNAfMet
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL11
- 60S ribosomal protein L11
- Chain AL42
- eL42
Coloring options: