HL_9BDN_121

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_121 not in the Motif Atlas

Homologous match to HL_2BTE_004

Geometric discrepancy: 0.1598

The information below is about HL_2BTE_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BDN|1|PTRN|G|53
9BDN|1|PTRN|U|54
9BDN|1|PTRN|U|55
9BDN|1|PTRN|C|56
9BDN|1|PTRN|A|57
9BDN|1|PTRN|A|58
9BDN|1|PTRN|A|59
9BDN|1|PTRN|U|60
9BDN|1|PTRN|C|61

Current chains

Chain PTRN

tRNAfMet

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL11

60S ribosomal protein L11

Chain AL42

eL42