HL_9BDN_127

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDN_127 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1707

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BDN|1|A28S|A|2376
9BDN|1|A28S|C|2377
9BDN|1|A28S|G|2378
9BDN|1|A28S|A|2379
9BDN|1|A28S|G|2380
9BDN|1|A28S|A|2381
9BDN|1|A28S|A|2382
9BDN|1|A28S|C|2383
9BDN|1|A28S|U|2384

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL31

60S ribosomal protein L31