HL_9BDP_010

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9BDP|1|A18S|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_010 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.1332

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9BDP|1|A18S|C|462
9BDP|1|A18S|C|463
9BDP|1|A18S|A|464
9BDP|1|A18S|A|465
9BDP|1|A18S|G|466
9BDP|1|A18S|G|467

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL23

60S ribosomal protein L23

Chain AS06

40S ribosomal protein S6

Chain EF1A

Elongation factor 1-alpha