HL_9BDP_012

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9BDP|1|A18S|U|541

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_012 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.2927

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9BDP|1|A18S|C|539
9BDP|1|A18S|U|540
9BDP|1|A18S|U|541
9BDP|1|A18S|U|542
9BDP|1|A18S|C|543
9BDP|1|A18S|G|544

Current chains

Chain A18S

18S rRNA

Nearby chains