HL_9BDP_013
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDP_013 not in the Motif Atlas
- Homologous match to HL_4V88_199
- Geometric discrepancy: 0.1704
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BDP|1|A18S|A|569
9BDP|1|A18S|C|570
9BDP|1|A18S|U|571
9BDP|1|A18S|U|572
9BDP|1|A18S|U|573
9BDP|1|A18S|A|574
9BDP|1|A18S|A|575
9BDP|1|A18S|A|576
9BDP|1|A18S|U|577
9BDP|1|A18S|C|578
9BDP|1|A18S|C|579
9BDP|1|A18S|U|580
9BDP|1|A18S|U|581
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
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