3D structure

PDB id
9BDP (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGCGGCG
Length
7 nucleotides
Bulged bases
9BDP|1|A28S|G|134, 9BDP|1|A28S|G|135
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9BDP_037 not in the Motif Atlas
Geometric match to HL_1KH6_003
Geometric discrepancy: 0.3706
The information below is about HL_1KH6_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05426.1
Basepair signature
cWW-F-F
Number of instances in this motif group
2

Unit IDs

9BDP|1|A28S|C|131
9BDP|1|A28S|G|132
9BDP|1|A28S|C|133
9BDP|1|A28S|G|134
9BDP|1|A28S|G|135
9BDP|1|A28S|C|136
9BDP|1|A28S|G|137

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL15
60S ribosomal protein L15
Chain AL35
60S ribosomal protein L35
Chain AL37
60S ribosomal protein L37

Coloring options:


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