HL_9BDP_038

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9BDP|1|A28S|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_038 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.2999

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9BDP|1|A28S|U|204
9BDP|1|A28S|C|205
9BDP|1|A28S|U|206
9BDP|1|A28S|G|207
9BDP|1|A28S|A|208
9BDP|1|A28S|U|209
9BDP|1|A28S|C|210
9BDP|1|A28S|G|211

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL26

60S ribosomal protein L26

Chain AL32

Large ribosomal subunit protein eL32