HL_9BDP_049

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

9BDP|1|A28S|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_049 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3877

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

9BDP|1|A28S|U|1177
9BDP|1|A28S|G|1178
9BDP|1|A28S|U|1179
9BDP|1|A28S|C|1180
9BDP|1|A28S|C|1183
9BDP|1|A28S|A|1184

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL05

60S ribosomal protein L5

Chain AL10

Ribosomal protein L10