HL_9BDP_067
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAGCAGUUG
- Length
- 9 nucleotides
- Bulged bases
- 9BDP|1|A28S|G|2421, 9BDP|1|A28S|U|2425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BDP_067 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3869
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BDP|1|A28S|C|2419
9BDP|1|A28S|A|2420
9BDP|1|A28S|G|2421
9BDP|1|A28S|C|2422
9BDP|1|A28S|A|2423
9BDP|1|A28S|G|2424
9BDP|1|A28S|U|2425
9BDP|1|A28S|U|2426
9BDP|1|A28S|G|2427
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL17
- 60S ribosomal protein L17
- Chain AL19
- 60S ribosomal protein L19
- Chain AL39
- 60S ribosomal protein L39
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