HL_9BDP_091

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9BDP|1|A28S|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_091 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1394

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

9BDP|1|A28S|C|4193
9BDP|1|A28S|U|4194
9BDP|1|A28S|G|4195
9BDP|1|A28S|G|4196
9BDP|1|A28S|G|4197
9BDP|1|A28S|G|4198
9BDP|1|A28S|C|4199
9BDP|1|A28S|G|4200
9BDP|1|A28S|G|4201

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL10

Ribosomal protein L10

Chain AL29

Large ribosomal subunit protein eL29

Chain PTRN

Transfer RNA; tRNA