HL_9BDP_123

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BDP_123 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.1972

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9BDP|1|TIRN|G|53
9BDP|1|TIRN|U|54
9BDP|1|TIRN|U|55
9BDP|1|TIRN|C|56
9BDP|1|TIRN|G|57
9BDP|1|TIRN|A|58
9BDP|1|TIRN|U|59
9BDP|1|TIRN|U|60
9BDP|1|TIRN|C|61

Current chains

Chain TIRN

tRNAAla

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL12

uL11

Chain EF1A

Elongation factor 1-alpha